This page lists all the identifiers/nodes in bioDBnet. Every identifier is associated with a name, description, examples and url. In addition if we download and maintain the whole database at the Advanced Biomedcal Computing Center then it's status is mentioned in the main database field, with an yes meaning it is downloaded, parsed and loaded into our relational tables. For each of these main databases additional fields are included to give more details on the coverage of these databases.
| Name: | Affy ID |
|---|
| Description: | Identifier for affymetrix probe set |
|---|
| Main Database: | Yes - Affy |
|---|
| Complete: | No - only annotation files for 3'IVT expression analysis arrays. Affy IDs included in the Ensembl and dbSNP database are also included. These do not have any annotations yet. |
|---|
| Species specific: | Yes - human, mouse, rat, dog, cow and monkey |
|---|
| Examples: | 1007_s_at, 1053_at, 117_at |
|---|
| URL: | http://www.affymetrix.com/ |
|---|
| | Name: | Affy Annotation |
|---|
| Details: | Information on the affymetrix array, probe target, alignments |
|---|
|
| | |
| Name: | Agilent ID |
|---|
| Description: | identifier for the Agilent arrays |
|---|
| Main Database: | No - information obtained from cross references in Ensembl and H-Inv |
|---|
| Examples: | A_14_P111876, A_23_P11531, A_44_P253268 |
|---|
| URL: | http://www.chem.agilent.com/ |
|---|
| | |
| Name: | ApiDB_CryptoDB ID |
|---|
| Description: | identifier for the Cryptosporidium Genome Resource, a part of ApiDB which is a portal for accessing genome-scale datasets associated with the protozoan parasites in the phlyum Apicomplexa |
|---|
| Main Database: | No - information obtained from cross references in Gene |
|---|
| Examples: | cgd1_3140, cgd1_2980, cgd1_3080 |
|---|
| URL: | http://cryptodb.org/cryptodb/ |
|---|
| | |
| Name: | Allergome Code |
|---|
| Description: | identifier for Allergome, which contains information on allergenic molecules causing allergic diseases like asthma, rhinitis, urticaria, anaphylaxis |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 3115, 7653, 3149 |
|---|
| URL: | http://www.allergome.org |
|---|
| | |
| Name: | BIND ID |
|---|
| Description: | identifier for BIND, the Biomolecular Interaction Network Database |
|---|
| Main Database: | No - information obtained from cross references in H-Inv |
|---|
| Examples: | 133599, 130942 |
|---|
| URL: | http://www.bind.ca |
|---|
| | |
| Name: | Biocarta Pathway Name |
|---|
| Description: | name of the pathway in biocarta |
|---|
| Main Database: | Yes - Biocarta |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - human and mouse |
|---|
| Examples: | h_MITRPathway, m_aktPathway |
|---|
| URL: | http://www.biocarta.com/ |
|---|
| | Name: | Biocarta Pathway Title |
|---|
| Details: | title of the biocarta pathway |
|---|
| Name: | Biocarta Pathway Description |
|---|
| Details: | description of the biocarta pathway |
|---|
|
| | |
| Name: | BioCyc ID |
|---|
| Description: | identifier for BioCyc, a collection of pathway/genome databases |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | HDUC233412:HD_0947-MONOMER, BJAP224911:BSR3237-MONOMER |
|---|
| URL: | http://www.biocyc.org |
|---|
| | |
| Name: | CCDS ID |
|---|
| Description: | identifier for the Consensus Coding DNA Sequence project, an effort to identify consistently annotated, high quality human and mouse protein coding regions |
|---|
| Main Database: | No - information obtained from cross references in H-Inv and Ensembl |
|---|
| Examples: | CCDS34794, CCDS4072, CCDS13870 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/CCDS/ |
|---|
| | |
| Name: | ChEBI ID |
|---|
| Description: | identifier for Chemical Entities of Biological Interest (ChEBI) is a dictionary of molecular entities focused on 'small' chemical compounds. |
|---|
| Main Database: | No - information obtained from cross references in DrugBank |
|---|
| Examples: | 30860. 15699 |
|---|
| URL: | http://www.ebi.ac.uk/chebi/ |
|---|
| | |
| Name: | Chromosomal Location |
|---|
| Description: | information on the chromosome and base pair location for an identifier |
|---|
| Main Database: | No - information obtained from Ensembl |
|---|
| | |
| Name: | CleanEx ID |
|---|
| Description: | identifier for CleanEx, a database that provides access to public gene expression data |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | HS_NME3, HS_HLA-C, MM_KRT14, MM_BIRC5 |
|---|
| URL: | http://www.cleanex.isb-sib.ch |
|---|
| | |
| Name: | CodeLink ID |
|---|
| Description: | identifier for the CodeLink arrays from GE Healthcare |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| Examples: | GE21784, GE1138666, GE882321 |
|---|
| URL: | http://www4.gelifesciences.com/APTRIX/upp01077.nsf/content/codelink_site |
|---|
| | |
| Name: | COG Term |
|---|
| Description: | term names for Clusters of Orthologous Groups of proteins |
|---|
| Main Database: | No - information obtained from the mappings in GO |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/COG/ |
|---|
| | |
| Name: | COSMIC ID |
|---|
| Description: | mutation identifier for COSMIC, a Catalogue Of Somatic Mutations In Cancer |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| Examples: | COSM45944, COSM46103 |
|---|
| URL: | http://www.sanger.ac.uk/genetics/CGP/cosmic/ |
|---|
| | |
| Name: | CPDB Protein Interactor |
|---|
| Description: | UniProt Entry Name of the interacting protein from ConsensusPathDB |
|---|
| Main Database: | Yes - cpdb |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - human |
|---|
| Examples: | MK03_HUMAN, MYC_HUMAN |
|---|
| URL: | http://consensuspathdb.org |
|---|
| | |
| Name: | CYGD ID |
|---|
| Description: | identifier for the Comprehensive Yeast Genome Database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | YDL033c, YML124c, YDR518w |
|---|
| URL: | http://mips.gsf.de/genre/proj/yeast/ |
|---|
| | |
| Name: | DPD DIN |
|---|
| Description: | Drug Indentification Number for the Health Canada Drug Product Database |
|---|
| Main Database: | No - information obtained from cross references in DrugBank |
|---|
| Examples: | 01970631, 00687405 |
|---|
| URL: | http://www.hc-sc.gc.ca/dhp-mps/prodpharma/databasdon/index-eng.php |
|---|
| | |
| Name: | dbSNP ID |
|---|
| Description: | identifier for the Single Nucleotide Polymorphism database |
|---|
| Main Database: | Yes - dbSNP |
|---|
| Complete: | No |
|---|
| Species specific: | Yes - human and mouse |
|---|
| Examples: | rs4875950, rs749822 |
|---|
| URL: | www.ncbi.nlm.nih.gov/projects/SNP/ |
|---|
| | Name: | SNP Info |
|---|
| Details: | INformation on the alleles, chromosome, organism and refseq accessions for the dbSNP ID |
|---|
|
| | |
| Name: | dictyBase ID |
|---|
| Description: | identifier for DictyBase, a Dictyostelium discoideum genomic database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | DDB0233219, DDB0188621, DDB0206225 |
|---|
| URL: | http://dictybase.org/ |
|---|
| | |
| Name: | DIP ID |
|---|
| Description: | identifier for the nodes/proteins in Database of Interacting Proteins |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | DIP:3299N, DIP:3398N, DIP:24582N |
|---|
| URL: | http://dip.doe-mbi.ucla.edu/ |
|---|
| | |
| Name: | DisProt ID |
|---|
| Description: | identifier for the Database of Protein Disorder |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | DP00348, DP00022, DP00119 |
|---|
| URL: | http://www.disprot.org/ |
|---|
| | |
| Name: | DrugBank Drug * |
|---|
| Description: | a resource that combines drug data with comprehensive drug target information |
|---|
| Main Database: | Yes - DrugBank |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - Human |
|---|
| URL: | http://www.drugbank.ca/ |
|---|
| | Name: | DrugBank Drug ID |
|---|
| Details: | identifier for DrugBank database Ex: DB00001, BTD00010, APRD00714 |
|---|
| Name: | DrugBank Drug Name |
|---|
| Details: | Generic and brand names of drugs used in DrugBank Ex: Aspirin, Lepirudin, Refludan |
|---|
| Name: | DrugBank Drug Info |
|---|
| Details: | Information on the drug name, type and category |
|---|
| Name: | DrugBank Drug Target ID |
|---|
| Details: | Identifier for the drug target Ex: 1102, 54 |
|---|
| Name: | DrugBank Drug Enzyme ID |
|---|
| Details: | Identifier for the enzyme for the drug Ex: 5718, 4118 |
|---|
|
| | |
| Name: | EC Number |
|---|
| Description: | the Enzyme Commission number is a numerical classification scheme for enzymes |
|---|
| Main Database: | No - information obtained from KEGG, GO, UniProt and H-Inv |
|---|
| Examples: | EC 1.6.5.3, EC 1.11.1.6, EC 6.3.4.3 |
|---|
| URL: | http://www.chem.qmul.ac.uk/iubmb/enzyme/ |
|---|
| | |
| Name: | EchoBASE ID |
|---|
| Description: | identifier for EchoBASE, an integrated post-genomic database for Escherichia coli |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | EB1114, EB2433, EB2470 |
|---|
| URL: | http://www.york.ac.uk/res/thomas/ |
|---|
| | |
| Name: | ECO2DBASE ID |
|---|
| Description: | identifier for the Escherichia coli 2-D gel gene-protein database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | D026.3, I065.0, D049.9 |
|---|
| URL: | http://pcsf.brcf.med.umich.edu/eco2dbase/ |
|---|
| | |
| Name: | EcoGene ID |
|---|
| Description: | identifier for EcoGene, a database of Escherichia coli sequence and function |
|---|
| Main Database: | No - information obtained from cross references in UniProt and Gene |
|---|
| Examples: | EG12560, EG11277, EG10817 |
|---|
| URL: | www.ecogene.org |
|---|
| | |
| Name: | Ensembl* |
|---|
| Description: | Identifiers for Ensembl |
|---|
| Main Database: | Yes - Ensembl |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| URL: | http://www.ensembl.org |
|---|
| | Name: | Ensembl Gene ID |
|---|
| Details: | Ensembl gene identifier Ex: ENSG00000182196, ENSMUSG00000040855 |
|---|
| Name: | Ensembl Transcript ID |
|---|
| Details: | Ensembl transcript identifier Ex: ENST00000262112, ENSMUST00000167991 |
|---|
| Name: | Ensembl Protein ID |
|---|
| Details: | Ensembl protein identifier Ex: ENSP00000356130, ENSMUSP00000003035 |
|---|
| Name: | Ensembl Biotype |
|---|
| Details: | The biotype of a gene or a protein Ex: protein-coding, ncRNA |
|---|
|
| | |
| Name: | FlyBase* |
|---|
| Description: | Identifiers for FlyBase |
|---|
| Main Database: | No - information obtained from cross references in UniProt, Ensembl and Gene |
|---|
| URL: | www.flybase.org |
|---|
| | Name: | FlyBase Gene ID |
|---|
| Details: | gene identifier for FlyBase, a database of Drosophila genes and genomes Ex: FBgn0083414, FBgn0084466 |
|---|
| Name: | FlyBase Transcript ID |
|---|
| Details: | Transcript identifier for FlyBase Ex: FBtr0089256, FBtr0078166 |
|---|
| Name: | FlyBase Protein ID |
|---|
| Details: | Protein identifier for FlyBase Ex: FBpp0077824, FBpp0088316 |
|---|
|
| | |
| Name: | FunCatDB ID |
|---|
| Description: | Identifier for the MIPS Functional Catalogue Database |
|---|
| Main Database: | No - information obtained from external mappings in GO |
|---|
| Examples: | 01.01.03.01.01, 20.01.01.07.05 |
|---|
| URL: | http://mips.gsf.de/projects/funcat |
|---|
| | |
| Name: | GenBank Nucleotide Accession |
|---|
| Description: | mRNA accession for the Entrez Nucleotide database at NCBI |
|---|
| Main Database: | Yes - genbank |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | AB190745, DQ337540, X06117 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=nuccore |
|---|
| | Name: | GenBank Nucleotide GI |
|---|
| Details: | GI number for the nucleotide sequences in GenBank |
|---|
| Name: | GenBank Nucleotide Info |
|---|
| Details: | Information on the length, organism and definition of the GenBank Nucleotide Accession |
|---|
|
| | |
| Name: | GenBank Protein Accession |
|---|
| Description: | protein accession for the NCBI protein sequence database |
|---|
| Main Database: | Yes - Genpept |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | BAA21795, AF041837, AAC72404 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein |
|---|
| | Name: | GenBank Protein GI |
|---|
| Details: | GI number for the protein sequences in GenBank |
|---|
| Name: | GenBank Protein Info |
|---|
| Details: | Information on the length, molecular weight, PI, organism and definition of the GenBank Protein Accession |
|---|
|
| | |
| Name: | Gene ID |
|---|
| Description: | identifier for a gene as assigned by the Entrez gene project |
|---|
| Main Database: | Yes - Gene |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | 3702, 1, 401285 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=Gene |
|---|
| | Name: | Gene Info |
|---|
| Details: | detailed information of a particular gene, contains gene id, gene symbol, gene synonyms, locustag, chromosome, cytoband location, description and gene type |
|---|
| Name: | Gene Symbol |
|---|
| Details: | Current symbolic representation of a gene Ex: repA2, A1BG |
|---|
| Name: | Gene Synonyms |
|---|
| Details: | Gene symbol aliases |
|---|
| Name: | Gene Symbol+Synonyms |
|---|
| Details: | Current Gene symbol and its aliases |
|---|
| Name: | Locus Tag |
|---|
| Details: | Locus Tag identifier from the NCBI EntrezGene database |
|---|
|
| | |
| Name: | GeneDB_Spombe ID |
|---|
| Description: | identifier for GeneDB, a database containing information on all genes and RNA's of Schizosaccharomyces pombe |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | SPBC13E7.08c, SPCC320.11c, SPBC3B8.06 |
|---|
| URL: | http://www.genedb.org/genedb/pombe/ |
|---|
| | |
| Name: | GeneFarm ID |
|---|
| Description: | identifier for GeneFarm, a database of structural and functional annotation of plant gene and protein families |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 1910, 3510, 4745 |
|---|
| URL: | http://urgi.versailles.inra.fr/Genefarm/ |
|---|
| | |
| Name: | GenomeReviews ID |
|---|
| Description: | identifier for Genome Reviews, a comprehensive annotated view of the genomic sequence of organisms with completely deciphered genomes |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | SPBC13E7.08c, SPCC320.11c, SPBC3B8.06 |
|---|
| URL: | http://www.ebi.ac.uk/GenomeReviews/ |
|---|
| | |
| Name: | GI Number |
|---|
| Description: | a numeric sequence identifer used at NCBI |
|---|
| Main Database: | Yes - complete GenBank and RefSeq databases are stored |
|---|
| Examples: | 22958901, 186973032 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/gquery |
|---|
| | |
| Name: | GO* |
|---|
| Description: | identifier for gene ontology, a project which annotates genes and gene products |
|---|
| Main Database: | Yes |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | GO:0016787, GO:0005739, GO:001602 |
|---|
| URL: | www.geneontology.org |
|---|
| | Name: | GO Annotation |
|---|
| Details: | Information on the definition and type of GO term |
|---|
| Name: | GO - Biological Process |
|---|
| Details: | GO biological process identifiers |
|---|
| Name: | GO - Cellular Component |
|---|
| Details: | GO cellular component identifiers |
|---|
| Name: | GO - Molecular Function |
|---|
| Details: | GO molecular function identifiers |
|---|
|
| | |
| Name: | GSEA* |
|---|
| Description: | Gene Set Enrichment Analysis |
|---|
| Main Database: | Yes |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - human, mouse, rat, chimpanzee, pig, dog, zebra fish, rhesus |
|---|
| URL: | http://www.broad.mit.edu/gsea/ |
|---|
| | Name: | GSEA Group Members |
|---|
| Details: | all the members belonging to a group as determined by GSEA Ex: STK3, EGFR |
|---|
| Name: | GSEA Standard Name |
|---|
| Details: | the standard name for a GSEA cluster Ex: UVC_XPCS_ALL_DN, KERATINOCYTEPATHWAY |
|---|
|
| | |
| Name: | H-Inv* |
|---|
| Description: | Human-invitational Database, an integrated database of human genes and transcripts |
|---|
| Main Database: | Yes |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - Human |
|---|
| URL: | http://www.h-invitational.jp/ |
|---|
| | Name: | H-Inv Info |
|---|
| Details: | detailed information on the chromosome loaction for H-Inv identifiers |
|---|
| Name: | H-Inv Locus ID |
|---|
| Details: | cluster identifier for H-Inv database Ex: HIX0016996, HIX0057233 |
|---|
| Name: | H-Inv Transcript ID |
|---|
| Details: | transcript identifier for H-Inv database Ex: HIT000022181, HIT000000123 |
|---|
| Name: | H-Inv Protein ID |
|---|
| Details: | protein identifier for H-Inv database Ex: HIP000042367, HIP000087930 |
|---|
|
| | |
| Name: | HAMAP ID |
|---|
| Description: | identifier for High-quality Automated and Manual Annotation of microbial Proteomes(HAMAP) |
|---|
| Main Database: | No - information obtained from cross references in GO and UniProt |
|---|
| Examples: | MF_01351, MF_00472, MF_01200 |
|---|
| URL: | http://ca.expasy.org/sprot/hamap/ |
|---|
| | |
| Name: | HGNC ID |
|---|
| Description: | identifier for the Human Gene Nomenculature Committee |
|---|
| Main Database: | No - information obtained from cross references in UniProt, Ensembl and Gene |
|---|
| Examples: | HGNC:7851, HGNC:4933, HGNC:32309 |
|---|
| URL: | http://www.genenames.org/ |
|---|
| | |
| Name: | HMDB Metabolite |
|---|
| Description: | Human Metabolome Database, a database about small molecule metabolites found in human body |
|---|
| Main Database: | Yes |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - Human |
|---|
| Examples: | 1-Methylhistidine, Cortexolone |
|---|
| URL: | http://www.hmdb.ca/ |
|---|
| | Name: | HMDB Metabolite Desc |
|---|
| Details: | detailed description of the metabolite |
|---|
| Name: | HMDB Enzyme - Gene Symbol |
|---|
| Details: | Gene Symbol of the enzyme for the metabolite |
|---|
| Name: | HMDB Enzyme - UniProt Entry Name |
|---|
| Details: | UniProt Entry Name of the enzyme for the metabolite |
|---|
|
| | |
| Name: | HomoloGene ID |
|---|
| Description: | identifier for HomoloGene, an automated detection system for homologs among the annotated genes of several eukaryotic genomes |
|---|
| Main Database: | Yes - HomoloGene |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | 4, 6, 7 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=homologene |
|---|
| | Name: | Homolog - Human Gene ID |
|---|
| Details: | Gene ID homolog in human |
|---|
| Name: | Homolog - Human Ens Gene ID |
|---|
| Details: | Ensembl Gene ID homolog in human |
|---|
| Name: | Homolog - Human Protein Acc |
|---|
| Details: | RefSeq Protein Accession homolog in human |
|---|
| Name: | Homolog - Human Ens Protein ID |
|---|
| Details: | Ensembl Protein ID homolog in human |
|---|
| Name: | Homolog - Mouse Gene ID |
|---|
| Details: | Gene ID homolog in mouse |
|---|
| Name: | Homolog - Mouse Ens Gene ID |
|---|
| Details: | Ensembl Gene ID homolog in mouse |
|---|
| Name: | Homolog - Mouse Protein Acc |
|---|
| Details: | RefSeq Protein Accession homolog in mouse |
|---|
| Name: | Homolog - Mouse Ens Protein ID |
|---|
| Details: | Ensembl Protein ID homolog in mouse |
|---|
| Name: | Homolog - Rat Gene ID |
|---|
| Details: | Gene ID homolog in rat |
|---|
| Name: | Homolog - Rat Ens Gene ID |
|---|
| Details: | Ensembl Gene ID homolog in rat |
|---|
| Name: | Homolog - Rat Protein Acc |
|---|
| Details: | RefSeq Protein Accession homolog in rat |
|---|
| Name: | Homolog - Rat Ens Protein ID |
|---|
| Details: | Ensembl Protein ID homolog in rat |
|---|
| Name: | Homolog - All Gene ID |
|---|
| Details: | All the gene homologs along with the corresponding Taxon ID's |
|---|
| Name: | Homolog - All Ens Gene ID |
|---|
| Details: | All the ensembl gene homologs along with the corresponding Taxon ID's |
|---|
| Name: | Homolog - All Protein Acc |
|---|
| Details: | All the protein homologs along with the corresponding Taxon ID's |
|---|
| Name: | Homolog - All Ens Protein ID |
|---|
| Details: | All the Ensembl Protein ID homologs along with the corresponding Taxon ID's |
|---|
|
| | |
| Name: | HPA ID |
|---|
| Description: | identifier for the Human Protein Atlas which shows expression and protein localization in human tissues, cancer cells and cell lines with the aid of immunohistochemistry images |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | HPA007415, CAB008374, HPA001589 |
|---|
| URL: | http://www.proteinatlas.org/ |
|---|
| | |
| Name: | HPRD ID |
|---|
| Description: | identifier for the Human Protein Reference Database |
|---|
| Main Database: | Yes - HPRD |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - Human |
|---|
| Examples: | 06590, 12335, 15886 |
|---|
| URL: | http://www.hprd.org/ |
|---|
| | Name: | HPRD Protein Interactor |
|---|
| Details: | RefSeq Protein Accession of the interacting protein from HPRD |
|---|
| Name: | HPRD Protein Complex |
|---|
| Details: | RefSeq Protein Accession of the protein forming a complex from HPRD |
|---|
| Name: | HPRD Non Protein Interactor |
|---|
| Details: | Identifier for the non protein interactor from HPRD |
|---|
| Name: | HPRD Protein Feature |
|---|
| Details: | Features of the protein along with position in the sequence from HPRD |
|---|
| Name: | HPRD Protein Modification |
|---|
| Details: | Post translational modifications of the protein from HPRD |
|---|
|
| | |
| Name: | Illumina ID |
|---|
| Description: | Identifier for Illumina microarrays |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| Examples: | scl020955.1_87-S, ILMN_32172 |
|---|
| URL: | http://www.illumina.com/ |
|---|
| | |
| Name: | IMGT/GENE-DB ID |
|---|
| Description: | Database of Immunoglobulin and T-cell receptor genes in IMGT (ImMunoGeneTics Information system) |
|---|
| Main Database: | No - information obtained from cross references in Gene and Ensembl |
|---|
| Examples: | TRBVA/OR9-2, TRAV4D-4, IGLC3 |
|---|
| URL: | http://imgt.cines.fr/IMGT_GENE-DB/GENElect?livret=0 |
|---|
| | |
| Name: | IntAct ID |
|---|
| Description: | identifier for IntAct, a protein interaction database from the European Bioinformatics Institute |
|---|
| Main Database: | No - information obtained from cross references in H-Inv |
|---|
| Examples: | EBI-754597, EBI-754606 |
|---|
| URL: | http://www.ebi.ac.uk/intact |
|---|
| | |
| Name: | InterPro ID |
|---|
| Description: | identifier for InterPro, a database of protein families, domains and functional sites |
|---|
| Main Database: | No - information obtained from cross references in GO, Ensembl, H-Inv, UniProt and Gene |
|---|
| Examples: | IPR002891, IPR000318, IPR007110 |
|---|
| URL: | http://www.ebi.ac.uk/interpro/ |
|---|
| | |
| Name: | IPI ID |
|---|
| Description: | identifier for International Protein Index |
|---|
| Main Database: | Yes - The database is now closed, the last release was in Feb 2013 |
|---|
| Examples: | IPI00807623, IPI00197419 |
|---|
| URL: | http://www.ebi.ac.uk/IPI/ |
|---|
| | |
| Name: | KEGG Pathway ID |
|---|
| Description: | Pathwy identifier for Kyoto Encyclopedia of Genes and Genomes (KEGG) |
|---|
| Main Database: | Yes - KEGG |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | hsa00521, mmu00710 |
|---|
| URL: | http://www.genome.jp/kegg/ |
|---|
| | Name: | KEGG Pathway Info |
|---|
| Details: | information on the KEGG pathways |
|---|
| Name: | KEGG Pathway Title |
|---|
| Details: | the title for KEGG pathways |
|---|
| Name: | KEGG Pathway Description |
|---|
| Details: | the description for KEGG pathways |
|---|
| Name: | KEGG Compound ID |
|---|
| Details: | Identifier for kegg compounds Ex: C02170, C00263 |
|---|
| Name: | KEGG Compound Name |
|---|
| Details: | Names of kegg compounds Ex: Acetate, Chondroitin-D-glucuronate, H2S |
|---|
| Name: | KEGG Disease ID |
|---|
| Details: | Identifier for the disease in KEGG medicus |
|---|
| Name: | KEGG Disease Info |
|---|
| Details: | Details on the disease from KEGG medicus |
|---|
| Name: | KEGG Drug ID |
|---|
| Details: | Identifier for the drug in KEGG medicus |
|---|
| Name: | KEGG Drug Name |
|---|
| Details: | Name of the drug from KEGG medicus |
|---|
| Name: | KEGG Drug Info |
|---|
| Details: | Details on the drug from KEGG medicus |
|---|
| Name: | KEGG Gene ID |
|---|
| Details: | identifier for kegg_genes Ex: hsa:27159, mmu:100041337, aae:aq_001 |
|---|
| Name: | KEGG Reaction ID |
|---|
| Details: | identifier for kegg reactions Ex: R00858, R00299 |
|---|
|
| | |
| Name: | LegioList ID |
|---|
| Description: | identifier for LegioList, a database for the analysis of Legionella pneumophilia genomes |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | lpl1455, lpp2666, lpl2673 |
|---|
| URL: | http://genolist.pasteur.fr/LegioList/ |
|---|
| | |
| Name: | Leproma ID |
|---|
| Description: | identifer for Leproma, a database for the analysis of Mycobacterium leprae genome |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | ML0608, ML2227, ML0224 |
|---|
| URL: | http://genolist.pasteur.fr/Leproma/ |
|---|
| | |
| Name: | MaizeGDB ID |
|---|
| Description: | identifier for MaizeGDB, the Maize Genetics and Genomics Database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 403201, 131629, 887762 |
|---|
| URL: | http://www.maizegdb.org/ |
|---|
| | |
| Name: | MEROPS ID |
|---|
| Description: | identifier for MEROPS, database of peptidases and the proteins that inhibit them |
|---|
| Main Database: | No - information obtained from cross references in Ensembl and UniProt |
|---|
| Examples: | C19.087, S01.011, A01.003 |
|---|
| URL: | http://merops.sanger.ac.uk/ |
|---|
| | |
| Name: | MetaCyc Reaction |
|---|
| Description: | reaction name/identifier for MetaCyc, an encyclopedia of metabolic pathways |
|---|
| Main Database: | No - information obtained from external mappings in GO |
|---|
| URL: | http://metacyc.org/ |
|---|
| | |
| Name: | MGC(ZGC/XGC) ID |
|---|
| Description: | identifier for Mammalian Gene Collection, a trans-NIH inititaive providing access to full-length protein-coding cDNA clones. Also includes ZGC (Zebrafish Gene Collection) and XGC (Xenopus Gene Collection) |
|---|
| Main Database: | Yes - MGC, ZGC and XGC |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - human, mouse, rat, cow, Zebrafish, Xenopus laevis and Xenopus tropicalis |
|---|
| Examples: | 140383,179411,127219 |
|---|
| URL: | http://mgc.nci.nih.gov/ |
|---|
| | Name: | MGC(ZGC/XGC) Image ID |
|---|
| Details: | Image ID for the MGC/XGC/ZGC clone |
|---|
| Name: | MGC(ZGC/XGC) Info |
|---|
| Details: | Information on the Image ID, status, library, GenBank accession, length
and GenBank definition |
|---|
|
| | |
| Name: | MGI ID |
|---|
| Description: | identifier for Mouse Genome Informatics |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, UniProt and Gene |
|---|
| Examples: | MGI:2385297, MGI:1346098, MGI:97309 |
|---|
| URL: | http://www.informatics.jax.org |
|---|
| | |
| Name: | MIM ID |
|---|
| Description: | identifier for the Mendelian Inheritance in Man, a catalog of human genes and genetic disorders |
|---|
| Main Database: | Yes - MIM |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | 603785, 115665, 172430 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=OMIM |
|---|
| | Name: | MIM Info |
|---|
| Details: | Title and chromosomal location for the MIM ID |
|---|
|
| | |
| Name: | MINT ID |
|---|
| Description: | identifier for the Molecular INTeraction database |
|---|
| Main Database: | No - information obtained from cross references in H-Inv |
|---|
| Examples: | MINT-66692, MINT-66913 |
|---|
| URL: | http://mint.bio.uniroma2.it/mint/ |
|---|
| | |
| Name: | miRBase ID |
|---|
| Description: | identifier for the miRNA sequences at miRBase |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| Examples: | MI0000060, MI0000557, MI0007150 |
|---|
| URL: | http://microrna.sanger.ac.uk/ |
|---|
| | |
| Name: | MultiFun ID |
|---|
| Description: | identifier to MultiFun, a classification system for cellular/physiological roles of E.coli gene products from GenProtEC |
|---|
| Main Database: | No - information obtained from external mappings in GO |
|---|
| Examples: | 1.1.1.8, 2.3.2 |
|---|
| URL: | http://genprotec.mbl.edu/files/MultiFun.html |
|---|
| | |
| Name: | NCIPID* |
|---|
| Description: | Pathway Interaction Database from NCI, containing curated information about known biomolecular interactions and key cellular processes assembled into signaling pathways |
|---|
| Main Database: | Yes - NCIPID |
|---|
| Complete: | Yes |
|---|
| Species specific: | Yes - Human |
|---|
| URL: | http://pid.nci.nih.gov/ |
|---|
| | Name: | NCIPID Pathway Name |
|---|
| Details: | Pathway name from NCIPID |
|---|
| Name: | NCIPID Pathway Title |
|---|
| Details: | Title of the NCIPID pathway |
|---|
| Name: | NCIPID Pathway Name |
|---|
| Details: | Pathway name from NCIPID |
|---|
| Name: | NCIPID Protein Complex Interactor |
|---|
| Details: | UniProt Entry Name for the protein forming the complex from NCIPID |
|---|
| Name: | NCIPID Protein Interactor |
|---|
| Details: | UniProt Entry Name for the interacting protein from NCIPID |
|---|
| Name: | NCIPID Protein Modification |
|---|
| Details: | Post translational modifications of the protein from NCIPID |
|---|
|
| | |
| Name: | Orphanet ID |
|---|
| Description: | identifier for orphanet, a database of rare diseases and orphan drugs |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 1452, 69712, 88 |
|---|
| URL: | http://www.orpha.net/consor/cgi-bin/home.php?Lng=GB |
|---|
| | |
| Name: | PANTHER ID |
|---|
| Description: | identifier for Protein ANalysis THrough Evolutionary Relationships, a resource that classifies genes by their functions |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | PTHR11264, PTHR21060:SF11, PTHR18804 |
|---|
| URL: | http://www.pantherdb.org/ |
|---|
| | |
| Name: | Paralog* |
|---|
| Description: | paralogs of the input identifiers |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| | Name: | Paralog Ens Gene ID |
|---|
| Details: | Ensembl Gene idenitifer for the paralog of the input identifier |
|---|
| Name: | Paralog Ens Protein ID |
|---|
| Details: | Ensembl Protein idenitifer for the paralog of the input identifier |
|---|
|
| | |
| Name: | PBR ID |
|---|
| Description: | Identifier for the Poxvirus Bioinformatics Resource center |
|---|
| Main Database: | No - information obtained from cross references in Gene |
|---|
| Examples: | 42477, 42573 |
|---|
| URL: | http://www.poxvirus.org/ |
|---|
| | |
| Name: | PDB ID |
|---|
| Description: | identifier for Protein Data Bank, a repository of protein and nucleic-acid 3-D structures |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, UniProt and H-Inv |
|---|
| Examples: | 1J5I, 1NCO, 2CBT |
|---|
| URL: | http://www.rcsb.org/pdb |
|---|
| | |
| Name: | PeroxiBase ID |
|---|
| Description: | identifier for the peroxidase database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 4426, 4352, 100 |
|---|
| URL: | http://peroxibase.isb-sib.ch/ |
|---|
| | |
| Name: | Pfam ID |
|---|
| Description: | identifier for Pfam, a database of protein families |
|---|
| Main Database: | No - information obtained from cross references in GO, Ensembl and UniProt |
|---|
| Examples: | PF07654, PF00059, PF07974 |
|---|
| URL: | http://pfam.sanger.ac.uk/ |
|---|
| | |
| Name: | PharmGKB ID |
|---|
| Description: | identifier for the Pharmacogenetics and Pharmacogenomics Knowledge Base, an integrated resource about how human gentics variation leads to variation in response to drugs |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | PA31656, PA35057, PA134899667 |
|---|
| URL: | http://www.pharmgkb.org/ |
|---|
| | Name: | PharmGKB Disease ID |
|---|
| Details: | PharmGKB identifier for diseases |
|---|
| Name: | PharmGKB Drug ID |
|---|
| Details: | PharmGKB identifier for drugs |
|---|
| Name: | PharmGKB Drug Info |
|---|
| Details: | Information on the drugs including name and type from PharmGKB |
|---|
| Name: | PharmGKB Gene ID |
|---|
| Details: | PharmGKB identifier for genes |
|---|
|
| | |
| Name: | PIR ID |
|---|
| Description: | identifier for Protein Information Resource(PIR) |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | A59028, S57591, D86338 |
|---|
| URL: | http://pir.georgetown.edu/ |
|---|
| | |
| Name: | PIRSF ID |
|---|
| Description: | identifier for PIRSF, a protein family classification system |
|---|
| Main Database: | No - information obtained from cross references in UniProt and Ensembl |
|---|
| Examples: | PIRSF002276, PIRSF000110, PIRSF000735 |
|---|
| URL: | http://pir.georgetown.edu/pirsf/ |
|---|
| | |
| Name: | PptaseDB ID |
|---|
| Description: | Identifier for the Prokaryotic Protein Phosphatase Database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | P3D0409136, P3D040487, P3D0410139 |
|---|
| URL: | http://vigen.biochem.vt.edu/p3d/p3d.htm |
|---|
| | |
| Name: | PRINTS ID |
|---|
| Description: | identifier for PRINTS, a database consisting of protein fingerprints |
|---|
| Main Database: | No - information obtained from cross references in GO, Ensembl and UniProt |
|---|
| Examples: | PR00662, PR00353, PR00079 |
|---|
| URL: | http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/ |
|---|
| | |
| Name: | ProDom ID |
|---|
| Description: | identifier for ProDom, a database of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases |
|---|
| Main Database: | No - information obtained from cross references in GO and UniProt |
|---|
| Examples: | PD000050, PD001018, PD001129 |
|---|
| URL: | http://prodom.prabi.fr |
|---|
| | |
| Name: | PROSITE ID |
|---|
| Description: | identifier for prosite, a database of protein domains, families and functional sites |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, GO and UniProt |
|---|
| Examples: | PS50835, PS01186, PS00615 |
|---|
| URL: | http://ca.expasy.org/prosite/ |
|---|
| | |
| Name: | PseudoCAP ID |
|---|
| Description: | identifier for the Psuendomonas Genome Database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | PA4174, PA1977, PA4774 |
|---|
| URL: | http://www.pseudomonas.com/ |
|---|
| | |
| Name: | PubChem ID |
|---|
| Description: | identifier for PubChem, database of chemical structures of small organic molecules |
|---|
| Main Database: | No - information from KEGG medicus (drug) |
|---|
| Examples: | 96026227, 17397569 |
|---|
| URL: | http://pubchem.ncbi.nlm.nih.gov/ |
|---|
| | |
| Name: | PubMed ID |
|---|
| Description: | identifier for PubMed, a search engine offering access to the MEDLINE database of citations and abstracts of biomedical research articles |
|---|
| Main Database: | No - information obtained from Gene and H-Inv |
|---|
| Examples: | 10984505, 8655511 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=PubMed |
|---|
| | |
| Name: | Reactome ID |
|---|
| Description: | identifier for Reactome, a curated knowledgebase of biological pathways |
|---|
| Main Database: | No - information obtained from cross references in GO and UniProt |
|---|
| Examples: | REACT_6840, REACT_1698, REACT_7970 |
|---|
| URL: | http://www.reactome.org |
|---|
| | Name: | Reactome Pathway Name |
|---|
| Details: | name of the Reactome pathway |
|---|
| Name: | Reactome Pathway Description |
|---|
| Details: | description of the Reactome pathway |
|---|
|
| | |
| Name: | REBASE ID |
|---|
| Description: | identifier for the Restriction Enzyme Database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 13433, 3523, 13642 |
|---|
| URL: | http://rebase.neb.com/rebase/rebase.html |
|---|
| | |
| Name: | RefSeq Genomic Accession |
|---|
| Description: | genomic accession for RefSeq, a collection of comprehensive, integrated, non-redundant set of nucleotide and protein sequences |
|---|
| Main Database: | Yes - Refseq Genomic |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | NW_001094801, NW_908862, NW_001257098 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/RefSeq/ |
|---|
| | Name: | RefSeq Genomic GI |
|---|
| Details: | GI number for the RefSeq genomic sequences |
|---|
|
| | |
| Name: | RefSeq *RNA Accession |
|---|
| Description: | RNA accession for RefSeq, a collection of comprehensive, integrated, non-redundant set of nucleotide and protein sequences |
|---|
| Main Database: | Yes - Refseq Nucleotide |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/RefSeq/ |
|---|
| | Name: | RefSeq mRNA Accession |
|---|
| Details: | mRNA accession for RefSeq Ex: NM_116243, XM_965655, NM_001100597 |
|---|
| Name: | RefSeq ncRNA Accession |
|---|
| Details: | non coding RNA accession for RefSeq Ex: NR_030888, NR_031225 |
|---|
| Name: | RefSeq Nucleotide GI |
|---|
| Details: | GI number for the RefSeq nucleotide sequences |
|---|
| Name: | RefSeq mRNA Info |
|---|
| Details: | Information on the length, organism and definition of the RefSeq mRNA Accession |
|---|
|
| | |
| Name: | RefSeq Protein Accession |
|---|
| Description: | protein accession for RefSeq, a collection of comprehensive, integrated, non-redundant set of nucleotide and protein sequences |
|---|
| Main Database: | Yes - Refseq Protein |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | NP_355517, YP_001544266, XP_971211 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/RefSeq/ |
|---|
| | Name: | RefSeq Protein GI |
|---|
| Details: | GI number for the RefSeq protein sequences |
|---|
| Name: | RefSeq Protein Info |
|---|
| Details: | Information on the length, organism and definition of the RefSeq Protein Accession |
|---|
|
| | |
| Name: | Rfam ID |
|---|
| Description: | identifier for the RNA families database of alignments and covariance models |
|---|
| Main Database: | No - information obtained from mappings in GO |
|---|
| Examples: | RF00004, RF00257, RF00397 |
|---|
| URL: | http://www.sanger.ac.uk/Software/Rfam/ |
|---|
| | |
| Name: | RGD ID |
|---|
| Description: | identifier for the Rat Genome Database |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, UniProt and Gene |
|---|
| Examples: | 1298474, 1300033 |
|---|
| URL: | http://rgd.mcw.edu/ |
|---|
| | |
| Name: | SCOP ID |
|---|
| Description: | identifier for Structural Classification of Proteins |
|---|
| Main Database: | No - information obtained from cross references in H-Inv |
|---|
| Examples: | a.87.1.1, g.52.1.1, b.36.1.1 |
|---|
| URL: | http://scop.mrc-lmb.cam.ac.uk/scop/ |
|---|
| | |
| Name: | SGD ID |
|---|
| Description: | identifier for Saccharomyces Genome Database (SGD) |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, UniProt and Gene |
|---|
| Examples: | S000000575, S000000533 |
|---|
| URL: | http://www.yeastgenome.org/ |
|---|
| | |
| Name: | SMART ID |
|---|
| Description: | identifier for the Simple Modular Architecture Research Tool which allows the identification and annotation of genetically mobile domains and the analysis of domain architectures |
|---|
| Main Database: | No - information obtained from cross references in GO and UniProt |
|---|
| Examples: | SM00034, SM00407, SM00456 |
|---|
| URL: | http://smart.embl-heidelberg.de/ |
|---|
| | |
| Name: | SP Keywords Accession |
|---|
| Description: | accessions for the keywords and categories used in UniProt |
|---|
| Main Database: | No - information obtained from mappings in GO |
|---|
| Examples: | KW-0008, KW-0458, KW-0862 |
|---|
| URL: | ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/complete/docs/keywlist.txt |
|---|
| | |
| Name: | SP Subcellular Location Acc |
|---|
| Description: | accessions for the controlled vocabulary of subcellular locations used in UniProt |
|---|
| Main Database: | No - information obtained from mappings in GO |
|---|
| Examples: | SL-0021, SL-0194, SL-0268 |
|---|
| URL: | ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/complete/docs/subcell.txt |
|---|
| | |
| Name: | STRING Protein Interactor |
|---|
| Description: | Protein identifier for the interacting protein from STRING |
|---|
| Main Database: | Yes - string |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | ENSP00000000233, ENSMUSP00000000001, NGR_a00010 |
|---|
| URL: | http://string-db.org |
|---|
| | |
| Name: | TAIR ID |
|---|
| Description: | identifier for The Arabidopsis Information Resource |
|---|
| Main Database: | No - information obtained from cross references in UniProt and Gene |
|---|
| Examples: | AT2G01031, AT2G01440 |
|---|
| URL: | http://www.arabidopsis.org/ |
|---|
| | |
| Name: | Taxon ID |
|---|
| Description: | identifier for the NCBI taxonomy database which contains the names of all organisms that are represented in the genetic databases with atleast one nucleotide or protein sequence |
|---|
| Main Database: | Yes - Taxon |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | 9606, 3702, 10090 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/Taxonomy/ |
|---|
| | Name: | Organism Scientific Name |
|---|
| Details: | the scientific name of an organism Ex: Homo sapiens, Mus musculus, Oryza granulata |
|---|
|
| | |
| Name: | TCDB ID |
|---|
| Description: | the identifier for the Transporter Classification Database |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | 3.A.1.201.8, 8.A.17.1.1 |
|---|
| URL: | http://www.tcdb.org |
|---|
| | |
| Name: | TIGRFAMs ID |
|---|
| Description: | the identifier for the TIGR protein families |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, GO and UniProt |
|---|
| Examples: | TIGR01029, TIGR00403, TIGR00871 |
|---|
| URL: | http://www.tigr.org/TIGRFAMs/ |
|---|
| | |
| Name: | TubercuList ID |
|---|
| Description: | identifier for TubercuList, a database for the analysis of tubercle bacilli genomes |
|---|
| Main Database: | No - information obtained from cross references in UniProt |
|---|
| Examples: | Rv0069c, Rv0089, Rv0382c |
|---|
| URL: | http://genolist.pasteur.fr/TubercuList/ |
|---|
| | |
| Name: | UCSC ID |
|---|
| Description: | UCSC identifier for known genes in human and mouse |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| Examples: | uc009uyv.2, uc009uyw.1, uc001ach.1 |
|---|
| URL: | http://genome.cse.ucsc.edu/knownGeneList |
|---|
| | |
| Name: | UM-BBD Enzyme ID |
|---|
| Description: | identifier for the enzymes in University of Minnesota's Biocatalysis/Biodegradation Database |
|---|
| Main Database: | No - information obtained from mappings in GO |
|---|
| Examples: | e0005, e0242, e0350 |
|---|
| | |
| Name: | UM-BBD Pathway ID |
|---|
| Description: | identifier for the pathways in University of Minnesota's Biocatalysis/Biodegradation Database |
|---|
| Main Database: | No - information obtained from mappings in GO |
|---|
| Examples: | 2,4-d, benz, pha3 |
|---|
| | |
| Name: | UniGene ID |
|---|
| Description: | identifier representing a unigene cluster, a set of transcript sequences that appear to come from the same transcription locus |
|---|
| Main Database: | Yes - Unigene |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | Cpo.1, Aae.30, Hs.656020 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=UniGene |
|---|
| | Name: | UniGene Sequence Accession |
|---|
| Details: | GenBank/EMBL/DDBJ accession number of the unigene sequence |
|---|
| Name: | EST Accession |
|---|
| Details: | subset of unigene sequence accessions which are expressed |
|---|
| Name: | Tissue (expressed in) |
|---|
| Details: | Tissues of origin for ESTs in the unigene cluster |
|---|
|
| | |
| Name: | UniProt* |
|---|
| Description: | Universal Protein Resource, a central repository of protein information from Swiss-Prot, TrEMBL and PIR |
|---|
| Main Database: | Yes - Uniprot |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| URL: | http://www.pir.uniprot.org/ |
|---|
| | Name: | UniProt Accession |
|---|
| Details: | the conserved identifier for uniprot sequences assigned at the time of inclusion (covers both primary and secondary accessions) Ex: P00044, Q61990 |
|---|
| Name: | UniProt Entry Name |
|---|
| Details: | the unique identifier for uniprot, often containing biologically relevant information Ex: SUHW3_MOUSE, CP8B1_HUMAN |
|---|
| Name: | UniProt Protein Name |
|---|
| Details: | the recommended protein name as defined in UniProt Ex: Alpha-1B-glycoprotein, Acetylglutamate kinase |
|---|
| Name: | UniProt Info |
|---|
| Details: | Information on the length, molecular weight, PI, organism and definition of the UniProt identifiers |
|---|
|
| | |
| Name: | UniSTS ID |
|---|
| Description: | sequence tagged sites (STSs) database identifier |
|---|
| Main Database: | Yes - Unists |
|---|
| Complete: | Yes |
|---|
| Species specific: | No |
|---|
| Examples: | 65536, 3, 196608 |
|---|
| URL: | http://www.ncbi.nlm.nih.gov/sites/entrez?db=unists |
|---|
| | Name: | UniSTS Info |
|---|
| Details: | information on the primers, PCR product size, organism etc. for a UniSTS ID |
|---|
|
| | |
| Name: | VectorBase* |
|---|
| Description: | Identifier for the VectorBase, the NIAID Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens |
|---|
| Main Database: | No - information obtained from cross references in Gene |
|---|
| URL: | http://www.vectorbase.org/ |
|---|
| | Name: | VectorBase Gene ID |
|---|
| Details: | VectorBase gene identifier Ex: AAEL000096, ISCW012994, CPIJ009919 |
|---|
|
| | |
| Name: | VEGA* |
|---|
| Description: | identifiers for VEGA, the Vertebrate Genome Annotation Database |
|---|
| Main Database: | No - information obtained from cross references in Ensembl |
|---|
| URL: | http://vega.sanger.ac.uk/ |
|---|
| | Name: | VEGA Gene ID |
|---|
| Details: | VEGA gene identifier Ex: OTTMUSG00000000057, OTTMUSG00000000030 |
|---|
| Name: | VEGA Transcript ID |
|---|
| Details: | VEGA transcript identifier Ex: OTTHUMT00000002842, OTTMUST00000059950 |
|---|
| Name: | VEGA Protein ID |
|---|
| Details: | VEGA transcript identifier Ex: OTTMUSP00000031249, OTTHUMP00000001143 |
|---|
|
| | |
| Name: | WormBase* |
|---|
| Description: | identifiers for wormbase, databases on the Caenorhabditis elegans and related nematodes |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, Gene and UniProt |
|---|
| URL: | http://www.wormbase.org/ |
|---|
| | Name: | WormBase Gene ID |
|---|
| Details: | WormBase gene identifier Ex: WBGene00012357, WBGene00011300 |
|---|
| Name: | WormPep Protein ID |
|---|
| Details: | protein identifier for the C elegans protein database Ex: CE35027, CE39182 |
|---|
|
| | |
| Name: | XenBase* |
|---|
| Description: | identifier for XenBase, the Xenopus laevis and Xenopus tropicalis biology and genomics resource |
|---|
| Main Database: | No - information obtained from cross references in Gene and UniProt |
|---|
| URL: | http://www.xenbase.org |
|---|
| | Name: | XenBase Gene ID |
|---|
| Details: | XenBase gene identifier Ex: XB-GENE-487001, XB-GENE-494124 |
|---|
|
| | |
| Name: | ZFIN ID |
|---|
| Description: | identifier for ZFIN, the Zebrafish Model Organism Database |
|---|
| Main Database: | No - information obtained from cross references in Ensembl, UniProt and Gene |
|---|
| Examples: | ZDB-GENE-000210-17, ZDB-GENE-980526-104 |
|---|
| URL: | http://zfin.org/ |
|---|
| | |
